.. compbio18 documentation master file, created by
   sphinx-quickstart on Tue Aug 14 10:15:14 2018.
   You can adapt this file completely to your liking, but it should at least
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Welcome to Computational Biology 2018!
===================================================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:


`Hub link <http://class.selucompbio2018.com>`_

Course Schedule 
=====================================================================================

+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 
| Week       | Topic                                                    | Due                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 
| Aug. 16    |  `Welcome <http://class.selucompbio2018.com>`_           | Nothing                                                                        |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 
| Aug. 20:   | `Python <http://class.selucompbio2018.com>`_             | Nothing                                                                        |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Aug. 23:   | `Data in Python I <http://class.selucompbio2018.com>`_   | `HW1 Aug 31 <https://goo.gl/VxHHj7>`_                                          |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Aug. 28:   | `Data in Python II <http://class.selucompbio2018.com>`_  | None                                                                           |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Aug. 30:   | `Python Programs <http://class.selucompbio2018.com>`_    | `HW2 Sept. 9 <https://bit.ly/2NyD88n>`_                                        |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Sept. 3:   |	Working with Data in Python III                         | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Sept. 10:  |	`Advanced Data Processing <https://bit.ly/2NyD88n>`_    | `Data Proj <https://bit.ly/2MfhBA2>`_                                          |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Sept. 17:  |	`Visualization <https://bit.ly/2NyD88n>`_               | Nothin'                                                                        |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Sept 24:   |	`Python and the Web <https://bit.ly/2NyD88n>`_          | `Read <https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820096/#!po=0.833333>`_   |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 
| Oct 1:     |	`Finish web <https://bit.ly/2NyD88n>`_                  | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Oct 8:     |	`Project management <https://bit.ly/2NyD88n>`_          | `Oct 18: Project 2 <https://bit.ly/2NyD88n>`_                                  |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Oct 14:    |	`Location data in python <https://bit.ly/2NyD88n>`_     | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Oct 20:    |	`LONI <https://bit.ly/2NyD88n>`_                        | Pick a paper                                                                   |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Oct 28:    |	Making a Python Package	                                | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Nov 6:     |	`Deploying an analysis <https://bit.ly/2NyD88n>`_       | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Nov 12:    |	`Documentation  <https://bit.ly/2NyD88n>`_              | `Nov. 15 Project Three  <https://bit.ly/2NyD88n>`_                             |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+  
| Nov 19:    |	Advanced Topics   / project work                        | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 
| Nov 25:    |	`Documentation II <https://bit.ly/2NyD88n>`_            | TBA                                                                            |
+------------+----------------------------------------------------------+--------------------------------------------------------------------------------+ 

Supplemental Resources
======================

 - `Slack: <https://join.slack.com/t/selucompbio2018/shared_invite/enQtNDE5MzgyNDgzODMwLWZjNDBmMDNjZmM3OGU0Yzk1MDJjMDIyNDY5ZTkwOTZkOWViNzRlNzJiMGEwYmYwMWYwNjQ3Njk5ZTFjYTk3ZTc>`_ a chat channel for the course 
 - `Data Carpentry: <https://datacarpentry.org/lessons/>`_ introduction to computational data management 
 - `Software Carpentry: <https://software-carpentry.org/lessons/>`_ Good coding practices 
 - `Code Academy: <https://www.codecademy.com/>`_ Interactive programming activities